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Mike Holmes Bio software
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Mike Holmes Bio

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Released: August 08, 2002  |  Added: June 26, 2006 | Visits: 3.740

Sherlock Holmes: Three Cases (Palm) A cryptic interactive story with 20 illustrations ONE HUNDRED YEARS AGO, in the time of top hats, London pea-souper fogs and seedy opium dens the first and greatest consulting detective of them all exercised his genius. Could you take on his role as super sleuth? Do you have an eye... Platforms: Palm OS

License: Shareware Cost: $9.99 USD Size: 223 KB Download (111): Sherlock Holmes: Three Cases (Palm) Download

Released: June 09, 2002  |  Added: February 25, 2006 | Visits: 3.303

Sherlock Holmes: Three Cases (Pocket PC) A cryptic interactive story with 20 illustrations ONE HUNDRED YEARS AGO, in the time of top hats, London pea-souper fogs and seedy opium dens the first and greatest consulting detective of them all exercised his genius. Could you take on his role as super sleuth? Do you have an eye... Platforms: Windows CE

License: Shareware Cost: $9.99 USD Size: 503 KB Download (112): Sherlock Holmes: Three Cases (Pocket PC) Download

Added: May 15, 2006 | Visits: 2.463

Sherlock Holmes: Three Cases (Windows) A cryptic interactive story with 20 illustrations. ONE HUNDRED YEARS AGO, in the time of top hats, London pea-souper fogs and seedy opium dens, the first and greatest consulting detective of them all exercised his genius. Can you take on his role as super sleuth? Do you have an eye for... Platforms: Windows

License: Shareware Cost: $9.99 USD Size: 507 KB Download (94): Sherlock Holmes: Three Cases (Windows) Download

Released: January 12, 2004  |  Added: October 14, 2006 | Visits: 2.776

Sherlock Holmes - A Library Whodunit? A complete collection of the Sherlock Holmes stories by Sir Arthur Conan Doyle. Read, listen to, and print the Sherlock Holmes stories. This software will read aloud the Sherlock Holmes stories to you using Text-To-Speech Technology. Has information on the author and the London sleuth,... Platforms: Windows

License: Shareware Cost: $14.50 USD Size: 10.6 MB Download (151): Sherlock Holmes - A Library Download

Added: January 18, 2010 | Visits: 731

Bio::Tree::NodeNHX Bio::Tree::NodeNHX is a Simple Tree Node with support for NHX tags. SYNOPSIS use Bio::Tree::NodeNHX; my $nodeA = new Bio::Tree::NodeNHX(); my $nodeL = new Bio::Tree::NodeNHX(); my $nodeR = new Bio::Tree::NodeNHX(); my $node = new Bio::Tree::NodeNHX(); $node->add_Descendents($nodeL);... Platforms: *nix

License: Freeware Size: 4.7 MB Download (94): Bio::Tree::NodeNHX Download

Added: January 24, 2010 | Visits: 1.262

Bio::Graphics::Glyph::alignment Bio::Graphics::Glyph::alignment is the "alignment" glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This is identical to the "graded_segments" glyph, and is used for drawing features that consist of discontinuous segments. The color intensity of each segment is... Platforms: *nix

License: Freeware Size: 4.7 MB Download (77): Bio::Graphics::Glyph::alignment Download

Added: April 02, 2010 | Visits: 567

Bio::OntologyIO::simplehierarchy Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",... Platforms: *nix

License: Freeware Size: 4.7 MB Download (70): Bio::OntologyIO::simplehierarchy Download

Added: March 15, 2010 | Visits: 1.119

Bio::Tools::Run::PiseWorkflow Bio::Tools::Run::PiseWorkflow is a class to create a Pise workflow using Pise application objects as methods. A workflow is defined by a set of methods which all instanciate the class PiseApplication. SYNOPSIS # First, create a Bio::Tools::Run::AnalysisFactory::Pise object: my $factory = new... Platforms: *nix

License: Freeware Size: 829.44 KB Download (73): Bio::Tools::Run::PiseWorkflow Download

Added: January 14, 2010 | Visits: 809

Bio::Tools::AlignFactory Bio::Tools::AlignFactory is a base object for alignment factories. SYNOPSIS You wont be using this as an object, but using a dervied class like Bio::Tools::pSW Holds common Alignment Factory attributes in place. Platforms: *nix

License: Freeware Size: 4.7 MB Download (138): Bio::Tools::AlignFactory Download

Added: March 27, 2010 | Visits: 1.138

Bio::Tools::Run::TribeMCL Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =... Platforms: *nix

License: Freeware Size: 829.44 KB Download (168): Bio::Tools::Run::TribeMCL Download

Added: February 19, 2010 | Visits: 737

Bio::NEXUS::Block Bio::NEXUS::Block is a Perl module that provides useful functions for blocks in NEXUS file (parent class). SYNOPSIS This module is the super class of all NEXUS block classes. It is not used specifically from a program; in other words, you dont create a new Bio::NEXUS::Block object. Other... Platforms: *nix

License: Freeware Size: 153.6 KB Download (71): Bio::NEXUS::Block Download

Added: November 27, 2010 | Visits: 914

Bio::NEXUS::Node Bio::NEXUS::Node is a Perl module that provides functions for manipulating nodes in trees. SYNOPSIS new Bio::NEXUS::Node; METHODS new Title : new Usage : $node = new Bio::NEXUS::Node(); Function: Creates a new Bio::NEXUS::Node object Returns : Bio::NEXUS::Node object Args : none... Platforms: *nix

License: Freeware Size: 153.6 KB Download (75): Bio::NEXUS::Node Download

Added: October 11, 2010 | Visits: 599

Bio::NEXUS::TaxaBlock Bio::NEXUS::TaxaBlock is a Perl module that represents TAXA block of a NEXUS file. SYNOPSIS if ( $type =~ /taxa/i ) { $block_object = new Bio::NEXUS::TaxaBlock($type, $block, $verbose); } If a NEXUS block is a taxa block, this module parses the block and stores the taxonomic data.... Platforms: *nix

License: Freeware Size: 153.6 KB Download (73): Bio::NEXUS::TaxaBlock Download

Added: May 21, 2010 | Visits: 632

Bio::NEXUS::TreesBlock Bio::NEXUS::TreesBlock is a Perl module that represents TREES block of a NEXUS file. SYNOPSIS if ( $type =~ /trees/i ) { $block_object = new Bio::NEXUS::TreesBlock( $block_type, $block, $verbose ); } If a NEXUS block is a Trees Block, this module parses the block and stores the tree data.... Platforms: *nix

License: Freeware Size: 153.6 KB Download (70): Bio::NEXUS::TreesBlock Download

Added: August 26, 2010 | Visits: 1.053

Bio::Restriction::Enzyme Bio::Restriction::Enzyme is a single restriction endonuclease (cuts DNA at specific locations). SYNOPSIS # set up a single restriction enzyme. This contains lots of # information about the enzyme that is generally parsed from a # rebase file and can then be read back use... Platforms: *nix

License: Freeware Size: 4.7 MB Download (111): Bio::Restriction::Enzyme Download

Added: September 24, 2010 | Visits: 629

Bio::Root::Object Bio::Root::Object is a core Perl 5 object. SYNOPSIS # Use this module as the root of your inheritance tree. Object Creation require Bio::Root::Object; $dad = new Bio::Root::Object(); $son = new Bio::Root::Object(-name => Junior, -parent => $dad, -make => full); See the new() method... Platforms: *nix

License: Freeware Size: 4.7 MB Download (73): Bio::Root::Object Download

Added: November 26, 2010 | Visits: 820

Bio::Tree::Compatible Bio::Tree::Compatible is a Perl module for testing compatibility of phylogenetic trees with nested taxa. SYNOPSIS use Bio::Tree::Compatible; use Bio::TreeIO; my $input = new Bio::TreeIO(-format => newick, -file => input.tre); my $t1 = $input->next_tree; my $t2 = $input->next_tree; my... Platforms: *nix

License: Freeware Size: 5.6 MB Download (77): Bio::Tree::Compatible Download

Added: November 05, 2010 | Visits: 660

Bio::TreeIO::svggraph Bio::TreeIO::svggraph is a simple output format that converts a Tree object to an SVG output. SYNOPSIS use Bio::TreeIO; my $in = new Bio::TreeIO(-file => input, -format => newick); my $out = new Bio::TreeIO(-file => >output, -format => svggraph); while( my $tree = $in->next_tree ) { my... Platforms: *nix

License: Freeware Size: 4.7 MB Download (75): Bio::TreeIO::svggraph Download

Added: October 24, 2010 | Visits: 989

Bio::Tools::Run::PiseApplication::fasta Bio::Tools::Run::PiseApplication::fasta is a Bioperl class for sequence database search. Parameters: fasta (Excl) Fasta program query (Sequence) Query sequence File pipe: seqfile seqtype (Excl) Is it a DNA or protein sequence (-n) protein_db (Excl) Protein Database nucleotid_db... Platforms: *nix

License: Freeware Size: 82.94 KB Download (79): Bio::Tools::Run::PiseApplication::fasta Download

Added: August 02, 2010 | Visits: 1.227

Bio::Tools::Run::PiseApplication::align2model Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model. Parameters: align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe:... Platforms: *nix

License: Freeware Size: 829.44 KB Download (75): Bio::Tools::Run::PiseApplication::align2model Download

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